Software (Downloads)
| BioEditor | Windows program used to prepare and present protein structure annotations containing formatted text, graphics, sequence data, and interactive molecular views |
| DOT | Package for multiprocessor systems to study molecular interactions using geometric fit information instead of closest distance between the molecules, and uses full Poisson-Boltzmann electrostatic potentials instead of the Coulombic electrostatic model |
| CIPRes | Java based platform for performing phylogenetic analysis |
| FADE and PADRE | Atomic density methods for molecular modeling of molecular shape and shape complementarity for UNIX systems. |
| Flex | Portable molecular graphics program that interactively displays 3D ball-and-stick models on workstations running the Xwindows system |
| Ligand Explorer (NEW!) | Java application for rapid inspections of protein-ligand interactions using protein structure files. |
| MICE | Java application producing high quality, interactive visualization of molecular scenes |
| Molecular Biology Toolkit (NEW!) | Java-based protein visualization and analysis tools for efficiently loading, managing and manipulating protein structure and sequence data and a set of graphical 3D and 2D visualization components |
| MMQL | C++ class library, for querying features of biological macromolecules |
| PDBlib | class library for representing the 3-dimensional structure of biological macromolecules |
| QuickPDB | Java applet for viewing PDB structures looking for interactions between sequence and structure |
| Shape | Package of two C++ programs used to analyze structure and chemistry at the molecular surface |
| WPDB | Microsoft Windows (95 and NT) based program to interrogate the 3-D structure of biological macromolecules |
| XtalView | Package for solving a macromolecular crystal structure by isomorphous replacement, including building the molecular model |