| Biology WorkBench |
Gene/Protein annotation and sequence analysis portal with file management accessing 30 databases and 66 tools |
| CE-MC |
Multiple Protein Structure Alignment by Monte Carlo Methods |
| Combinatorial Extension (CE) |
3-D Protein Structure Comparison and Alignment, with all-to-all comparison of known protein structures |
| Compound Likeness Method (CL) |
Searches the complete structure database for structural similarities to a known polypeptide chain or polypeptide chain fragment to find 3-D similarities in protein structures |
| CMS Molecular Biology Resource |
Compendium of electronic and Internet-accessible tools for molecular biology, biotechnology, biological modeling, and biochemistry. |
| Dicty WorkBench |
Dictyostelium discoideum genome annotation and analysis portal |
| EULER: DNA Fragment Assembly Software |
A powerful DNA fragment assembly tool that uses an Eulerian path approach instead of the classical "overlap - layout - consensus" paradigm used in currently available assembly tools. |
| SDSC-1 Protein Homology Modeling Server |
Protein structure prediction tool demonstrated at CASP4, the Community-wide Experiment on Critical Assessment of Techniques for Protein Structure Prediction |
| Family Pairwise Search |
Search a library of protein families with a protein sequence you provide. |
| GAMESS |
General Atomic Molecular Electronic Structure Systems program for ab initio quantum chemistry |
| MEME/MAST |
Discovers motifs in groups of related DNA or protein sequences and searches sequence databases using motifs. |
| Meta-MEME |
A software toolkit for building and using Motif-based hidden Markov models of DNA and proteins. |
| Molecular Information Agent |
Interface to a cross-reference search and retrieval system 50 biological databases for query protein or DNA sequence. |
| Net Center for Plant Genomics |
Plant genomics-specific web search database and Knockout Search, a BLAST search against several public insertion databases producing merged results. |
| Protein Explorer |
Visualization of the three-dimensional structures of protein, DNA, and RNA macromolecules, and their interactions with ligands, inhibitors, and drugs. |
| SledgeHMMER |
This web server is designed to carry out batch searching of Pfam database using the 'hmmpfam' program. The 'hmmpfam' program used in this web server is optimized to run several times faster than the original program from the 2.3.2 release of HMMER. SledgeHMMER.pdf |
| Structure Alignment Tools (SAT) |
Interactive numerical tools for structure-based protein sequence alignment |
